Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3765119_3766474_R

Intron Information:

Intron Rank:

153643

Intron Class:

major

Intron Phase:

Intron Coordinates:

3765119 - 3766474

Intron Length:

1356

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCCC

5'SS Class:

major

3'SS Sequence:

TCCAATTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAT

U12 Branch Point Sequence:

AACTCTCCAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

63.8

40.7

Major BPS

71.8

0.54

1.2

32.5

Major PPT

78.5

0.64

0.9

72.2

37.3

Minor 5ss

31.4

-2.1

3.3

42.6

44.4

Minor BPS

-0

1.8

64.45

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029912

3764855 - 3766595

1741