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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3770666_3770743_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3770666 - 3770743
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACAGCA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
TTCGGGCTAACC
Flanking Amino Acid:
ATRGGWEGRHRKGPRLLACP
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
64.8
35.2
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
87
0.83
0.7
80.3
31.6
Minor 5ss
30.8
-2.2
3.3
39.5
45.9
Minor BPS
41.2
-0.6
2.6
58.49
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014474
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015109
3770481 - 3782270
11790