About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3776750_3777072_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3776750 - 3777072
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTCCTCACAC
Flanking Amino Acid:
AYIPGFAEIPSGDVCEMMFS
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
70
40.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
33
-1.9
3.6
46.7
48.6
Minor BPS
54.2
0.11
1.9
69.54
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014474
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039978
3773295 - 3782270
8976
ENSAPLT00000036861
3769219 - 3782654
13436
ENSAPLT00000015109
3770481 - 3782270
11790
ENSAPLT00000046773
3769219 - 3782654
13436