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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3777135_3778328_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3777135 - 3778328
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTATCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTAGAT
U12 Branch Point Sequence:
TGTATCTTTAAG
Flanking Amino Acid:
SERLGEARNKEKPGRKAAEP
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
55.2
0.13
1.2
52.5
43.3
Major PPT
68.9
0.43
1.1
71.9
38.1
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
48.9
-0.2
1.9
57.94
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014474
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036861
3769219 - 3782654
13436
ENSAPLT00000015109
3770481 - 3782270
11790
ENSAPLT00000046773
3769219 - 3782654
13436
ENSAPLT00000039978
3773295 - 3782270
8976