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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3778463_3779495_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3778463 - 3779495
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTGCTCCAACT
Flanking Amino Acid:
CTPTDRAEAQEGDNLKDGTE
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
62.7
0.29
1
56.8
39
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
49.2
0.02
2
72.5
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014474
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039978
3773295 - 3782270
8976
ENSAPLT00000036861
3769219 - 3782654
13436
ENSAPLT00000015109
3770481 - 3782270
11790
ENSAPLT00000046773
3769219 - 3782654
13436