About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3779667_3780012_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3779667 - 3780012
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TGTCTCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TGCTACTTACAC
Flanking Amino Acid:
EIGPAGASVKELVRPRRVPN
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
78.1
0.63
0.8
69.6
36.7
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
49.2
-0
1.9
61.42
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014474
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036861
3769219 - 3782654
13436
ENSAPLT00000015109
3770481 - 3782270
11790
ENSAPLT00000046773
3769219 - 3782654
13436
ENSAPLT00000039978
3773295 - 3782270
8976