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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3781704_3782123_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3781704 - 3782123
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATCCAC
U12 Branch Point Sequence:
CAGCCATCCACT
Flanking Amino Acid:
KTHRPAPPKEAPKKLIRYID
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
48.9
-0
1.2
59.8
36.5
Major PPT
85.5
0.8
0.7
77.3
31.4
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
41.8
-0.5
2.1
56.21
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014474
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039978
3773295 - 3782270
8976
ENSAPLT00000036861
3769219 - 3782654
13436
ENSAPLT00000015109
3770481 - 3782270
11790
ENSAPLT00000046773
3769219 - 3782654
13436