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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3782163_3782294_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3782163 - 3782294
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTTCCACTGACA
Flanking Amino Acid:
KLIRYIDNQVPPPRWPGVGG
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
79.9
0.67
0.8
76.7
32
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
49.3
-0
2
67.55
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014474
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046773
3769219 - 3782654
13436