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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3784657_3785209_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3784657 - 3785209
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCGG
5'SS Class:
major
3'SS Sequence:
GTTCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTTAT
U12 Branch Point Sequence:
CCCTCGTTATCC
Flanking Amino Acid:
ANMRRFDSAQIAPAIPRAAF
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
46.3
49
Major BPS
68.8
0.47
1.3
59.6
46.8
Major PPT
72.9
0.52
0.8
66.2
30
Minor 5ss
34.6
-1.7
3.5
47.8
47.7
Minor BPS
47.1
-0.2
2.3
57.19
47.7

Associated Gene:

Gene:
FBXL15
Ensembl Gene ID:
ENSAPLG00000014471
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015070
3783613 - 3788167
4555