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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3797372_3804424_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3797372 - 3804424
Intron Length:
7053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCCCTTTCCATT
Flanking Amino Acid:
SFGTPLASNMSDHPLSQLVS
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.6
0.76
0.8
77.8
29.3
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
43
-0.4
1.8
56.05
41.5

Associated Gene:

Gene:
PSD
Ensembl Gene ID:
ENSAPLG00000014121
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044261
3791290 - 3821359
30070
ENSAPLT00000019229
3791223 - 3821359
30137
ENSAPLT00000014713
3791223 - 3821165
29943