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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3804620_3805455_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3804620 - 3805455
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
GCTGCTTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
CTGTGGCCAACG
Flanking Amino Acid:
KADVARHLGKKSFLKELALM
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
70.1
40.8
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
77
0.61
0.9
73.1
37.3
Minor 5ss
36.9
-1.5
3.5
48.7
41.9
Minor BPS
35.6
-1.2
2.6
43.72
47.7

Associated Gene:

Gene:
PSD
Ensembl Gene ID:
ENSAPLG00000014121
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044261
3791290 - 3821359
30070