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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_380495_387550_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
380495 - 387550
Intron Length:
7056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
GAAACTTGAACT
Flanking Amino Acid:
VYRNNIDDVVRCAERHYDTA
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
57.4
0.31
1.5
69.15
40.8

Associated Gene:

Gene:
PTEN
Ensembl Gene ID:
ENSAPLG00000015686
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020758
357632 - 402822
45191