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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3807014_3816492_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3807014 - 3816492
Intron Length:
9479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
TCCGACTGACCC
Flanking Amino Acid:
GTDFPKELLKALYGSIKNEK
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
55.9
0.15
1.2
49
38
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
43.6
-0.5
1.9
51.54
45.4

Associated Gene:

Gene:
PSD
Ensembl Gene ID:
ENSAPLG00000014121
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019229
3791223 - 3821359
30137
ENSAPLT00000014713
3791223 - 3821165
29943
ENSAPLT00000044261
3791290 - 3821359
30070