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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3816537_3817503_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3816537 - 3817503
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
CTGTACCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAT
U12 Branch Point Sequence:
CCTTCCCCAACC
Flanking Amino Acid:
SIKNEKLQWAIDEEELRKSL
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
74.3
36.2
Major BPS
55.9
0.15
1
61.2
32.6
Major PPT
66.9
0.38
1
62
39.6
Minor 5ss
40.9
-1
3
56.6
41.1
Minor BPS
54.5
0.12
2
67.47
44.1

Associated Gene:

Gene:
PSD
Ensembl Gene ID:
ENSAPLG00000014121
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044261
3791290 - 3821359
30070
ENSAPLT00000019229
3791223 - 3821359
30137
ENSAPLT00000014713
3791223 - 3821165
29943