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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3817627_3822439_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3817627 - 3822439
Intron Length:
4813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
TCCGTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TGCGCACTAACA
Flanking Amino Acid:
TEAQEKLQSTGGDAGVLREV
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
71.4
0.48
0.9
65.2
36.3
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
48
-0.1
2
62.11
43.6

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030476
3816274 - 3826629
10356