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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3817683_3818418_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3817683 - 3818418
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TCTTCTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAG
U12 Branch Point Sequence:
TCTTCTCCCACA
Flanking Amino Acid:
KIHADPDCKKTPRGKRGWKP
Intron Amino Acid Position:
843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.1
34.8
Major BPS
46.8
-0.2
1.6
43
41.8
Major PPT
81.7
0.71
0.7
76.4
25.8
Minor 5ss
37.6
-1.4
3.6
51.8
39.7
Minor BPS
45.9
-0.3
2.2
63.87
42.8

Associated Gene:

Gene:
PSD
Ensembl Gene ID:
ENSAPLG00000014121
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019229
3791223 - 3821359
30137
ENSAPLT00000014713
3791223 - 3821165
29943
ENSAPLT00000044261
3791290 - 3821359
30070