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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3819234_3819632_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3819234 - 3819632
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CACCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GCCGTGTCACCT
Flanking Amino Acid:
LPSSCTRLSQDEQVKSHETK
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
66.6
0.38
0.9
57
38.3
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
36.4
-0.9
2.2
47.31
45.4

Associated Gene:

Gene:
PSD
Ensembl Gene ID:
ENSAPLG00000014121
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044261
3791290 - 3821359
30070
ENSAPLT00000019229
3791223 - 3821359
30137
ENSAPLT00000014713
3791223 - 3821165
29943