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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3819777_3820119_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3819777 - 3820119
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCTAC
U12 Branch Point Sequence:
TGCCCTGCTACC
Flanking Amino Acid:
KQKEEYLEFEKSRYGTYAML
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
44.6
-0.3
1.3
39.5
40.5
Major PPT
77.9
0.63
0.8
69.5
36.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
38.9
-0.8
2.2
48.88
41.2

Associated Gene:

Gene:
PSD
Ensembl Gene ID:
ENSAPLG00000014121
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044261
3791290 - 3821359
30070
ENSAPLT00000019229
3791223 - 3821359
30137