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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3819929_3820119_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3819929 - 3820119
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCTAC
U12 Branch Point Sequence:
TGCCCTGCTACC
Flanking Amino Acid:
HALPPSAPHHRNPATAPTPC
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
44.6
-0.3
1.3
39.5
40.5
Major PPT
77.9
0.63
0.8
69.5
36.8
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
38.9
-0.8
2.2
48.88
41.2

Associated Gene:

Gene:
PSD
Ensembl Gene ID:
ENSAPLG00000014121
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014713
3791223 - 3821165
29943