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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3823418_3823505_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3823418 - 3823505
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
CCCTCGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAG
U12 Branch Point Sequence:
GACTCAGCCACC
Flanking Amino Acid:
PTLTKLLLKAGADVLNENDE
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
48.2
-0.1
1.6
57.3
41.7
Major PPT
67.6
0.4
0.8
60
29.7
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
35.9
-1.1
2.5
45.7
42.5

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030476
3816274 - 3826629
10356
ENSAPLT00000014030
3822030 - 3826629
4600
ENSAPLT00000038515
3822030 - 3826629
4600