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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3823609_3823700_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3823609 - 3823700
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
CCTTTCTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCTTTCTCCATA
Flanking Amino Acid:
LNMATHLVKKLGADVNSRTF
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
76.9
0.61
0.7
72.3
26
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
47.4
-0.2
1.9
58.18
42.5

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038515
3822030 - 3826629
4600
ENSAPLT00000030476
3816274 - 3826629
10356
ENSAPLT00000014030
3822030 - 3826629
4600