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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3824438_3824596_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3824438 - 3824596
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAAAG
U12 Branch Point Sequence:
GGAGCTGGGACA
Flanking Amino Acid:
LAASQDENGDTPLHLAIIHE
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
72.2
39.5
Major BPS
41.2
-0.5
1.4
45
36.7
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
32.2
-2
3.3
39.4
39.8
Minor BPS
39.5
-0.8
2
44.87
37.7

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038515
3822030 - 3826629
4600
ENSAPLT00000030476
3816274 - 3826629
10356
ENSAPLT00000014030
3822030 - 3826629
4600