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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3824739_3824843_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3824739 - 3824843
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
CTTCGTGCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CGGTGCTGATGT
Flanking Amino Acid:
SLYCKELQKQAQVCHLWMLA
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
57
42.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
71.1
0.47
0.9
64.8
36.4
Minor 5ss
28
-2.5
3.5
29.2
43.4
Minor BPS
39.7
-0.7
2.2
52.93
47.8

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038515
3822030 - 3826629
4600
ENSAPLT00000030476
3816274 - 3826629
10356
ENSAPLT00000014030
3822030 - 3826629
4600