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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3825464_3825584_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3825464 - 3825584
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCCAAC
U12 Branch Point Sequence:
TCTTTCCTGCCC
Flanking Amino Acid:
DFSPTDVHKQYAIVFRTPPY
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
41.7
-0.5
1.3
42.1
38.6
Major PPT
74.9
0.56
0.8
69.1
31.4
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
41.1
-0.7
3.5
65.65
40.6

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038515
3822030 - 3826629
4600
ENSAPLT00000030476
3816274 - 3826629
10356
ENSAPLT00000014030
3822030 - 3826629
4600