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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3825671_3825827_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3825671 - 3825827
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
TCCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAG
U12 Branch Point Sequence:
TGTGAGACAGGC
Flanking Amino Acid:
VYLLCDKVQKDDIEVRFYED
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
48
-0.1
1.6
46.5
47
Major PPT
70.6
0.46
0.7
61.4
29.1
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
26.7
-1.7
2.3
37.21
40

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030476
3816274 - 3826629
10356
ENSAPLT00000014030
3822030 - 3826629
4600
ENSAPLT00000038515
3822030 - 3826629
4600