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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3825933_3826186_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3825933 - 3826186
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
CTTTGCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TCGTGGTTAATC
Flanking Amino Acid:
PVISDPIHDSKSPGASNLKI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
34.5
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
83.2
0.75
0.8
77.2
31.6
Minor 5ss
29.7
-2.3
3.1
38.1
40.6
Minor BPS
47.8
-0.1
2.4
61.22
45

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030476
3816274 - 3826629
10356
ENSAPLT00000014030
3822030 - 3826629
4600
ENSAPLT00000038515
3822030 - 3826629
4600