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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3826346_3826450_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3826346 - 3826450
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCA
5'SS Class:
major
3'SS Sequence:
CCCGGCCCGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
CTGACGGCATCT
Flanking Amino Acid:
KIRNKNSLLTEAELREIELE
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
62.8
37.7
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
56.3
0.14
1
49.7
34.2
Minor 5ss
22.7
-3.1
3.4
29.2
43.6
Minor BPS
33.7
-1.1
2.6
52.25
48.3

Associated Gene:

Gene:
NFKB2
Ensembl Gene ID:
ENSAPLG00000013409
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038515
3822030 - 3826629
4600
ENSAPLT00000030476
3816274 - 3826629
10356
ENSAPLT00000014030
3822030 - 3826629
4600