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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3839801_3840090_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3839801 - 3840090
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAA
U12 Branch Point Sequence:
AAAGCTGTATTT
Flanking Amino Acid:
LEKPCEMGATESERATAPAS
Intron Amino Acid Position:
1746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
57.5
0.19
1.4
61.7
43.1
Major PPT
88.7
0.87
0.6
84.2
23.8
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
41.9
-0.5
2.1
55.68
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893