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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3840928_3841475_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3840928 - 3841475
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TGCTTGTTGACA
Flanking Amino Acid:
RMRASTLLSKVFLQHLSPLL
Intron Amino Acid Position:
1603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
52.5
0.07
2.1
66.24
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893