About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_384223_387550_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
384223 - 387550
Intron Length:
3328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTATATTAATA
Flanking Amino Acid:
VYRNNIDDVVRFLDSKHKNH
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
64.4
0.32
1
67.2
31.4
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
59.7
0.3
1.6
69.89
36

Associated Gene:

Gene:
PTEN
Ensembl Gene ID:
ENSAPLG00000015686
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016365
357548 - 402822
45275