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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3842440_3842793_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3842440 - 3842793
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGTCA
5'SS Class:
major
3'SS Sequence:
CCTTCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAC
U12 Branch Point Sequence:
CTACACTGGATC
Flanking Amino Acid:
WSNCWCPLLQGIAWLCCDAR
Intron Amino Acid Position:
1525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
62.6
38.5
Major BPS
60.3
0.26
1.1
68.9
36.5
Major PPT
81.2
0.7
0.7
76.1
25.9
Minor 5ss
35.9
-1.6
3.3
39
46.4
Minor BPS
46.1
-0.3
1.6
53.7
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893