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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3844248_3844556_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3844248 - 3844556
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
CTGTGCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAC
U12 Branch Point Sequence:
CCTTTCCTACTA
Flanking Amino Acid:
VDMMNSGWLVVGKDDIDTSK
Intron Amino Acid Position:
1330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
70.9
34.5
Major BPS
64
0.35
1
72.7
31.8
Major PPT
73.5
0.53
0.9
66.1
35.8
Minor 5ss
27.3
-2.6
3
30.7
36.9
Minor BPS
47.5
-0.1
1.9
58.62
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893