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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3846924_3847377_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3846924 - 3847377
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTGGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCACCCTACCC
Flanking Amino Acid:
EMLLRIVLENRDRVTCVWQT
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
62.7
0.29
1.1
58.1
47.3
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
50.8
0.01
2
68
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893