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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3847473_3848846_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3847473 - 3848846
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAG
U12 Branch Point Sequence:
CAAGTCACAAAT
Flanking Amino Acid:
QLESLQELMKALISVTPDEE
Intron Amino Acid Position:
1118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
60.7
0.27
1.6
59.7
46.7
Major PPT
77.3
0.61
0.9
69.7
41.5
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
41
-0.6
1.8
52.27
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893