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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3849653_3849779_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3849653 - 3849779
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCAATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTTTTCACT
Flanking Amino Acid:
YLQREETPSNRGESTVLSFV
Intron Amino Acid Position:
1052

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.6
0.67
0.9
73.2
35.8
Minor 5ss
34.9
-1.7
3.3
50
46.3
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893