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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3849845_3850331_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3849845 - 3850331
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
GTCGGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATGTATACATCT
Flanking Amino Acid:
AELLPKAMVEVEDFVDPNGK
Intron Amino Acid Position:
1031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
72.1
0.5
1
61.5
44.6
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
41.3
-0.5
2
60.62
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893