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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3850509_3852117_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3850509 - 3852117
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAACAT
U12 Branch Point Sequence:
TCTTGCCGACTA
Flanking Amino Acid:
LCKFTALSSESIENLPTVFG
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
48.2
-0.1
1.2
55.4
40.4
Major PPT
89.3
0.88
0.6
85
22.7
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
41.3
-0.6
2.2
56.38
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893