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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3852212_3853142_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3852212 - 3853142
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
AGTTATTACATT
Flanking Amino Acid:
TIIQKAISGFRKCAMISAHY
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
73.9
0.59
1
81
30.2
Major PPT
82.1
0.72
0.7
73.4
31.5
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
43.9
-0.4
2.1
63.48
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893