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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3853380_3854964_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3853380 - 3854964
Intron Length:
1585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAAAATTCAACC
Flanking Amino Acid:
DILEDMYHAIKNDEIVMPEE
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
75.1
0.56
0.8
69.3
31.3
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
46.7
-0.2
1.7
53.54
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893