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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3855048_3855742_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3855048 - 3855742
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTTTTCCCCACA
Flanking Amino Acid:
RKQNVPMTLEEFRKNLKGVN
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
48.2
-0.1
2.2
71.95
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893