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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3856274_3856741_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3856274 - 3856741
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTCTCATTG
Flanking Amino Acid:
KNIDLLESFVGTFSFQGLRL
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.7
34.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.7
0.83
0.7
81.4
29.8
Minor 5ss
31.4
-2.1
3.2
35.2
41.4
Minor BPS
49.8
-0.1
1.9
59.88
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893