About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3859641_3860163_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3859641 - 3860163
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTGACTGTAATG
Flanking Amino Acid:
CMELEGGNETAEKSVPKKPT
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
75.2
32.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
82
0.72
0.8
74.3
36.5
Minor 5ss
35.1
-1.7
3.5
50.5
46.1
Minor BPS
49.3
-0.1
2.1
59.32
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893