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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3860305_3861350_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3860305 - 3861350
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGATTC
5'SS Class:
major
3'SS Sequence:
TTAACTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
TMNSTKETNNNNERVLSEGK
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
71.4
33
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.3
0.66
0.9
73
37
Minor 5ss
44.4
-0.6
3.1
61.5
38.2
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893