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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3862692_3863346_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3862692 - 3863346
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CAATTCATAATT
Flanking Amino Acid:
KEELCRHLFQLLSVERLNLY
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
57.5
0.32
1.6
70.54
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893