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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3863559_3863740_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3863559 - 3863740
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CGCTTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
GAGTTGTTAAGA
Flanking Amino Acid:
VRFTQSSQKEGAALVPYGLP
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
75.8
0.58
0.8
73.6
31.5
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
46.4
-0.2
2.3
56.4
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893