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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3863910_3864547_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3863910 - 3864547
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GATACCAATGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAAAT
Flanking Amino Acid:
TDNQNQPELQSESLREEKIQ
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
49.7
-0
1.2
47.2
39.3
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
58.2
0.34
1.7
72.8
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893