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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3864775_3867124_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3864775 - 3867124
Intron Length:
2350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
TGTTTCTCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTCTACTGATCT
Flanking Amino Acid:
QPAANASAIAASGVTFIDAP
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
79.5
0.66
0.9
78.9
34.4
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
55
0.24
1.9
78.01
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893