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Intron Name: Anas_platyrhynchos_platyrhynchos_6_3867261_3871957_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3867261 - 3871957

Intron Length:

4697

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTCTCTC

5'SS Class:

weak_major

3'SS Sequence:

TTATGGTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

ATATTCTTAATG

Flanking Amino Acid:

ERVLLFKNLKLKMRAGGMSE

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.1

0.22

1.4

59.7

45.2

Major BPS

0.92

0.9

86.2

29.1

Major PPT

80.4

0.68

0.9

77.1

41.8

Minor 5ss

45.8

-0.4

2.6

62.4

42.1

Minor BPS

0.58

1.2

70.25

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012766

3839370 - 3927262

87893