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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3872057_3873180_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3872057 - 3873180
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTATCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TTTTGTTTAAAC
Flanking Amino Acid:
KSYMGTNMKKISSCLLNKLE
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
80.6
0.69
0.8
75.5
32.7
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
66.3
0.49
1.8
79.33
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893