About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3874534_3874896_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3874534 - 3874896
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
CCTGTGTTATTT
Flanking Amino Acid:
FRICFEMRLSELLRKSAEHT
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
72.8
38.8
Major BPS
67
0.42
1.1
57.7
39
Major PPT
85.2
0.79
0.8
80.7
31.3
Minor 5ss
35.4
-1.7
3.6
48.8
47.3
Minor BPS
42.9
-0.4
2.2
57.89
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893